彭泽

发布者：园艺学院发布时间：2021-09-08浏览次数：4719

姓名：彭泽 

职业：首聘副教授

工作地址：广州市天河区五山路483号华南农业大学园艺学院果树系

邮编：510642

邮箱: zepeng@scau.edu.cn

 

彭泽，31岁，果树学专业，博士，首聘副教授，主要研究蔷薇科果树基因组学与生物信息学。2012年毕业于山东农业大学园艺专业，获农学学士学位；2014年毕业于美国佛罗里达大学农学专业，获农学硕士学位；2018年毕业于美国佛罗里达大学农学专业，获博士学位。2018年至2020年在美国佛罗里达大学环境园艺系完成博士后研究工作，主要研究作物为柑橘；2021年以“青年才俊”高层次人才引进华南农业大学园艺学院果树系，2021年至今任首聘副教授。近年来，主持广州市基础研究计划项目1项（主持）、枇杷种质资源创新与利用福建省高校重点实验室开放课题资助1项（主持）。以第一作者在The Plant Journal，Horticulture Research，Journal of Experimental Botany，等重要SCI国际期刊上发表论文9篇。

 

教育经历


2014-2018

博士学位

农学系

佛罗里达大学

美国

2012-2014

硕士学位

农学系

佛罗里达大学

美国

2008-2012

学士学位

园艺系

山东农业大学

中国

 




 佛罗里达大学2021世界大学排名：97 (软科ARWU), 107 (US News)。


研究方向

 

植物基因组学，生物信息学，分子育种

 

研究经历

 

03/2021-至今

华南农业大学，园艺学院果树系，首聘副教授

 

· 蔷薇科果树基因组学与生物信息学研究

· 枇杷属植物基因组进化、成花演变，及果实发育

 

11/2018-03/2020

佛罗里达大学，环境园艺系，博士后 (PI: Dr. Zhanao Deng)

 

柑橘和花卉的基因组学、转录组学抗病性研究

· 通过与加州大学伯克利分校、Joint Genome Institute合作，作为主要负责人完成一项具有黄龙病耐病性的柑橘野生近缘物种基因组计划

· 完成该物种染色体级别的基因组组装，研究并发现了与抗病性和抗寒性有关的进化和正向选择基因

· 负责通过三代Iso-seq转录组测序研究柑橘全长转录组

· 负责通过结合三代全长转录组测序和二代RNA-seq研究一种花卉的霜霉病抗病性

 

08/2014-08/2018

佛罗里达大学，农学系，博士 (PI: Dr. Jianping Wang)

 

花生根瘤固氮的遗传学、基因组学和转录组学研究

· 对无根瘤的花生突变体材料进行表型和基因型分析

· 通过转录组测序RNA-seq研究与根瘤控制相关的基因表达

· 基于多种二代测序技术平台，比较了多种SNP生物信息分析流程

· 通过遗传定位，QTL-seq发现了两个控制花生根瘤形成的基因，并完成功能验证

· 参与了花生基因组计划

 

09/2012-08/2014

佛罗里达大学，农学系，硕士 (PI: Dr. Jianping Wang)

 

花生的遗传学研究

· 利用花生转录组序列发展了分子标记

· 对花生种质资源进行了遗传多样性分析和群体结构分析




































专业技能

 

  1. 生物信息分析，包括基因组和转录组组装，注释，比较基因组学、进化基因组学、以及全基因组关联分析。熟悉三代和二代基因组测序、转录组测序、以及靶向序列捕获测序。

  2. 发展和利用分子标记，包括SSR, Indel和SNP。

  3. 遗传定位和QTL-seq分析

  4. 载体构建和毛根转化

  5. 利用即时qPCR进行基因表达分析

  6. 田间种植和管理

 

发表论文

 

第一作者

 

  1. Peng, Z., He, Y., Parajuli, S., You, Q., Wang, W., Bhattarai, K., Palmateer, A.J., Deng, Z. (2021) Integration of early disease resistance phenotyping, histological characterization and transcriptome sequencing reveals insights into downy mildew resistance in impatiens. Horticulture Research 8:108

  2. Peng, Z., Bredeson, J.V., Wu, G.A., Shu, S., Rawat, N., Du, D., Parajuli, S., Yu, Q., You, Q., Rokhsar, D.S., Gmitter, F.G., Deng Z. (2020) A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus. The Plant Journal doi:10.1111/tpj.14993

  3. Peng, Z., Chen, H., Tan, L., Shu, H., Varshney, R.K., Zhou, Z., Zhao, Z., Luo, Z., Chitikineni, A., Wang, L., Maku, J., López, Y., Gallo, M., Zhou, H., Wang, J. (2020) Natural polymorphisms in a pair of NSP2 homoeologs can cause loss of nodulation in peanut. Journal of Experimental Botany doi:10.1093/jxb/eraa505

  4. Peng, Z., Zhao, Z., Clevenger, J.P., Chu, Y., Paudel, D., Ozias-Akins, P., Wang, J. (2020) Comparison of SNP calling pipelines and NGS platforms to predict the genomic regions harboring candidate genes for nodulation in cultivated peanut. Frontiers in Genetics 11:222

  5. Peng, Z., Liu, F., Wang, L., Zhou, H., Paudel, D., Tan, L., Maku, J., Gallo, M., Wang, J. (2017) Transcriptome profiles reveal gene regulation of peanut (Arachis hypogaea L.) nodulation. Scientific Reports 7:40066

  6. Peng, Z., Fan, W., Wang, L., Paudel, D., Leventini, D., Tillman, B.L., Wang, J. (2017) Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences. Molecular Genetics and Genomics 292:955-965

  7. Peng, Z., Paudel, D., Wang, L., Luo, Z., You, Q., Wang J. (2020) Methods for target enrichment sequencing via probe capture in legumes. In Legume Genomics: Methods and Protocols. Springer Nature, New York, NY. Vol 2107, pp 199-231 (Book Chapter)

  8. Peng, Z., Tan, L., Lopez, Y., Maku, J., Liu, F., Zhou, H., Tseng, Y.C., Yang, X., Hsieh, Y.F., Song, J., Wang, L., Tillman, B.L., Gallo, M., Wang, J. (2018) Morphological and genetic characterization of non-nodulating peanut recombinant inbred lines. Crop Science 58:540-550

  9. Peng, Z., Gallo, M., Tillman, B.L., Rowland, D., Wang, J. (2016) Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.). Molecular Genetics and Genomics 291:363-381

 

共同作者

 

  1. Shu, H., Luo, Z., Peng, Z., Wang, J. (2020) The application of CRISPR/Cas9 in hairy roots to explore the functions of AhNFR1 and AhNFR5 genes during peanut nodulation. BMC Plant Biology 20:1-15

  2. Paudel, D., Liu, F., Wang, L., Crook, M., Maya, S., Peng, Z., Kelley, K., Ané, J.M., Wang, J. (2020) Isolation, characterization, and complete genome sequence of a Bradyrhizobium strain Lb8 from nodules of peanut utilizing crack entry infection. Frontiers in Microbiology 11:93

  3. Luo, Z., Cui, R., Chavarro, C., Tseng, Y., Zhou, H., Peng, Z., Chu, Y., Yang, X., López, Y., Tillman, B., Dufault, N., Brenneman, T., Isleib, T.G., Holbrook, C., Ozias-Akins, P., Wang, J. (2020) Mapping quantitative trait loci (QTL) and estimating the epistasis controlling stem rot resistance in cultivated peanut (Arachis hypogaea). Theoretical and Applied Genetics 133:1201-1212

  4. You, Q., Yang, X., Peng, Z., Islam, M.S., Sood, S., Luo, Z., Comstock, J., Xu, L., Wang, J. (2019) Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification. Theoretical and Applied Genetics 132:2829-2845

  5. Zhuang, W., Chen, H., Yang, M., Wang, J., …, Peng, Z. (44th), …, Paterson, A.H., Wang, X., Ming, R., Varshney, R.K. (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics 51:865-876

  6. Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R., Wang, J. (2019) Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes. Plant Biotechnology Journal 17:488-498

  7. Zhao, Z., Tseng, Y.C., Peng, Z., Lopez, Y., Chen, C.Y., Tillman, B.L., Wang, J. (2017) Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm. BMC Genetics 19:17

  8. You, Q., Yang, X., Peng, Z., Xu, L., Wang, J. (2017) Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array. Frontiers in Plant Science 9:104

  9. Tseng, Y., Tillman, B.L., Peng, Z., Wang, J. (2016) Identification of major QTLs underlying tomato spotted wilt virus resistance in peanut cultivar Florida-EP TM ‘113’. BMC Genetics 17:128

  10. Guo, B., Khera, P., Wang, H., Peng, Z., Sudini, H., Wang, X., Osiru, M., Chen, J., Vadez, V., Yuan, M., Wang, C.T., Zhang X., Waliyar, F., Wang, J., Varshney, R.K.  (2016) Annotation of trait loci on integrated genetic maps of Arachis species. In Peanuts: Genetics, Processing, and Utilization. The American Oil Chemists’ Society (AOCS). pp 163-207 (Book Chapter)

 

会议摘要



  1. Peng, Z., Wu, G.A., Bredeson, J., Shu, S., Rokhsar, D.S., Gmitter, F.G., Deng, Z. (2019) Genome-wide analysis of cold signaling-related genes in cold hardy Poncirus trifoliata. American Society for Horticultural Science Annual conference. Las Vegas, NV, July 21-25.

  2. Peng, Z., Deng, Z. (2019) Genome-wide analysis of NBS-LRR genes in Petunia. American Society for Horticultural Science Annual conference. Las Vegas, NV, July 21-25.

  3. Peng, Z., Liu, F., Wang, L., Wang, J. (2016) Genes and gene network involved in peanut nodulation. 48th Proceedings of the American Peanut Research and Education Society, Inc. Meeting. Clearwater Beach, FL, July 12-14.

  4. Peng, Z., Liu, F., Wang, L., Wang, J. (2015) Transcriptome of cultivated peanut (Arachis hypogaea L.) roots infected by Bradyrhizobia revealed candidate genes involved in nodulation. 47th Proceedings of the American Peanut Research and Education Society, Inc. Meeting. Charleston, SC, July 14-16.

  5. Peng, Z., Gallo, M., Rowland, D., Tillman, B.L., Wang, J. (2015) Molecular marker development and germplasm evaluation for cultivated peanut (Arachis hypogaea L.). International Plant & Animal Genome Conferences. San Diego, CA, January 10-14.

  6. Peng, Z., Gallo, M., Rowland, D., Wang, J. (2014) Molecular marker discovery and validation from peanut (Arachis hypogaea L.) transcript sequences. 7th International Conference of the Peanut Research Community. Savannah, GA, November 11-14.

 

担任期刊审稿人

 

  1. Frontiers in Genetics (Review Editor)

  2. BMC Genomics

  3. Crop Science

  4. International Journal of Molecular Sciences

  5. PeerJ

  6. Plants

  7. Plant and Cell Physiology

 

奖项荣誉

 

2019

最佳博士毕业论文奖, 农学系, 佛罗里达大学

2016

 

Davidson Graduate Student Travel Scholarship, Institute of Food and Agricultural Sciences, 佛罗里达大学

2016

 

 

Second place winner of Joe Sugg Graduate Student Competition, 48th American Peanut Research and Education Society, Inc. Meeting. Clearwater Beach, FL, July 12-14.

2015

最佳硕士毕业论文奖, 农学系, 佛罗里达大学

2013

完成植物生物信息研讨班培训, J. Craig Venter Institute, MD, July 15-19.

2011

全国大学生英语竞赛一等奖, 中国

 

（2021年9月更新）


personal resume

Associate Prof.ZePeng

College of Horticulture

South China Agricultural University

Guangzhou, Guangdong 510642, P. R. China

Tel: (+86) 13610208706

E-mail: zepeng@scau.edu.cn

https://yy.scau.edu.cn/2021/0908/c9141a289243/page.htm

Education

l  Ph.D. (Agronomy)

University of Florida,Gainesville, 2018

l  M.S. (Agronomy)

University of Florida,United States, 2014

l  B.S. (Horticulture)

Shandong Agricultural University, Qingdao, 2007

Areaof Expertise

Plantgenomicsand genetics

SelectedPublications

1.        Peng, Z., Zhao, C., Li, S., Guo, Y., Xu, H., Hu, G., Liu, Z., Chen, X., Chen, J., Lin, S., Su, W., Yang, X. (2022) Integration of genomics, transcriptomics and metabolomics identifies candidate loci underlying fruit weight in loquat. Horticulture Research 9:uhac037

2.        Peng, Z., Wang, M., Zhang, L., Jiang, Y., Zhao, C., Shahid, M.Q., Bai, Y., Hao, J., Peng, J., Gao, Y., Su, W., Yang, X. (2021) EjRAV1/2 delay flowering through transcriptional repression of EjFTs and EjSOC1s in loquat. Frontiers in Plant Science 12:816086

3.        Peng, Z., He, Y., Parajuli, S., You, Q., Wang, W., Bhattarai, K., Palmateer, A.J., Deng, Z. (2021) Integration of early disease resistance phenotyping, histological characterization and transcriptome sequencing reveals insights into downy mildew resistance in impatiens. Horticulture Research 8:108

4.        Peng, Z., Bredeson, J.V., Wu, G.A., Shu, S., Rawat, N., Du, D., Parajuli, S., Yu, Q., You, Q., Rokhsar, D.S., Gmitter, F.G., Deng Z. (2020) A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus. The Plant Journal doi:10.1111/tpj.14993

5.        Peng, Z., Chen, H., Tan, L., Shu, H., Varshney, R.K., Zhou, Z., Zhao, Z., Luo, Z., Chitikineni, A., Wang, L., Maku, J., López, Y., Gallo, M., Zhou, H., Wang, J. (2020) Natural polymorphisms in a pair of NSP2 homoeologs can cause loss of nodulation in peanut. Journal of Experimental Botany 72(4):1104-1118

6.        Peng, Z., Zhao, Z., Clevenger, J.P., Chu, Y., Paudel, D., Ozias-Akins, P., Wang, J. (2020) Comparison of SNP calling pipelines and NGS platforms to predict the genomic regions harboring candidate genes for nodulation in cultivated peanut. Frontiers in Genetics 11:222

7.        Peng, Z., Liu, F., Wang, L., Zhou, H., Paudel, D., Tan, L., Maku, J., Gallo, M., Wang, J. (2017) Transcriptome profiles reveal gene regulation of peanut (Arachis hypogaea L.) nodulation. Scientific Reports 7:40066

8.        Peng, Z., Fan, W., Wang, L., Paudel, D., Leventini, D., Tillman, B.L., Wang, J. (2017) Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences. Molecular Genetics and Genomics 292:955-965

9.        Peng, Z., Paudel, D., Wang, L., Luo, Z., You, Q., Wang J. (2020) Methods for target enrichment sequencing via probe capture in legumes. In Legume Genomics: Methods and Protocols. Springer Nature, New York, NY. Vol 2107, pp 199-231 (Book Chapter)

10.    Peng, Z., Tan, L., Lopez, Y., Maku, J., Liu, F., Zhou, H., Tseng, Y.C., Yang, X., Hsieh, Y.F., Song, J., Wang, L., Tillman, B.L., Gallo, M., Wang, J. (2018) Morphological and genetic characterization of non-nodulating peanut recombinant inbred lines. Crop Science 58:540-550

11.        Peng, Z., Gallo, M., Tillman, B.L., Rowland, D., Wang, J. (2016) Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.). Molecular Genetics and Genomics 291:363-381


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